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Indocarbocyanine (C3)dye

The chemical structure of Indocarbocyanine (C3)dye is shown at the right. The absorption and fluorescence emission spectra are shown below. The structure, absorption, and fluorescence data were all obtained from the PhotochemCAD package by Jonathan Lindsey. This excellent program allows rapid comparison of spectra and enables one to do a variety of photochemically relevant calculations. Chemical Structure

Absorption

Absorption Spectrum

This is a graph of the molar extinction coefficient of Indocarbocyanine (C3)dye dissolved in methanol. It was measured by R. A. Fuh on 6/21/95 [H. Du, R. A. Fuh, J. Li, A. Corkan, J. S. Lindsey, "PhotochemCAD: A computer-aided design and research tool in photochemistry," Photochemistry and Photobiology, 68, 141-142, 1998]. Indocarbocyanine (C3)dye has a molar extinction coefficient of 133,000 M-1cm-1 at 544.25 nm [P. J. Sims, A. S. Waggoner, C.-H. Wang, and J. F. Hoffman, "Studies on the mechanism by which cyanine dyes measure membrane potential in red blood cells and phosphatidylcholine vesicles," Biochem., 13, 3315-3330, 1974].

The literature absorption data were obtained in ethanol. Other fluorescence yields include 0.057 in n-butyronitrile [J. S. Lindsey, P. A. Brown, and D. A. Siesel, "Visible light harvesting in covalently-linked porphyrin-cyanine dyes," Tetrahedron, 45, 4845-4866, 1989], and 0.08 in 95% ethanol for an n-hexyl-substituted dye [F. Grieser, M. Lay, and P. J. Thistlethwaite, "Excited-state torsional relaxation in 1,1'-dihexyl-3,3,3',3'-tetramethylindocarbocyanine iodide: Application to the probing of micelle structure.," J. Phys. Chem., 89, 2065-2070, 1985].

Original Data | Extinction Data

Fluorescence

Emission Spectrum

This is the fluorescence emission spectrum of Indocarbocyanine (C3)dye dissolved in methanol. The spectrum was taken by R. A. Fuh on 6/21/95 using an excitation wavelength of 500 nm [H. Du, R. A. Fuh, J. Li, A. Corkan, J. S. Lindsey, "PhotochemCAD: A computer-aided design and research tool in photochemistry," Photochemistry and Photobiology, 68, 141-142, 1998]. The quantum yield is 0.07 [A. Waggoner, R. DeBiasio, P. Conrad, G. R. Bright, L. Ernst, K. Ryan, M. Nederlof, and D. Taylor, "Multiple spectral parameter imaging," Methods in Cell Biology, 30, 449-478, 1989].

Original Data

This page and graphs were created by Scott Prahl.